racingsraka.blogg.se - Get it done meme

#Get it done meme install
#Get it done meme manual
#Get it done meme archive
#Get it done meme software

Parallel compilation is disabled if MPI is not found or if

#Get it done meme software

Theĭefault URL for the MEME Suite SOAP services isīy default, configure will establish if your system has the right software to It can also be used to specify the URL for the MEME Suite SOAP services. The parameter enable-web turns on installation of the MEME Suite

If you are installing your own MEME Suite web application you will need to set this It sets the URL for the web site hosting the static HTML pages and CGI scripts. The parameter with-url was introduced in the previous section. In many cases you will be able to take advantage of the default values for these

the directory where service configuration files should be put for Opal.

the URL for the web site hosting the MEME Suite SOAP services.

the URL for the web site hosting the static HTML pages and CGI scripts.

Three parameters are needed to completely configure the MEME Suite web application: Configuring installation of the MEME Suite Web Application This will cause the MEME Suite to build its own copies of

#Get it done meme install

configure -prefix= $HOME/meme your install path -enable-build-libxml2 -enable-build-libxslt Sqlite-jdbc-x.x.x.jar in the directory $CATALINA_BASE/lib. In the directory $CATALINA_BASE/webapps and the SQLite library When installing the website the MEME Suite will put LOGS/ directory for temporary files created by webservice scripts when jobs Lib/ contains Perl modules and Python libraries that are included with the MEME Suite. *.eps - templates used for creating images for some MEME Suite tools.*.html, *.js, *.css - templates used for creating HTML output for some MEME Suite tools.*.xsl - XML style sheets for creating HTML output from XML for some MEME Suite tools.

#Get it done meme archive

The web archive when the web site is installed. doc/ Documentation for the MEME Suite tools. Which contains the gomo databases and a folder fasta_databases Which contains the motif databases, a folder gomo_databases This directory should contain a folder motif_databases The directories contain: bin/ MEME Suite executables and scripts db/ this directory or DIR specified by -with-db=DIR option is created. Installation of MEME Suite will create the following directories: Script as described there to see what you may be missing.

#Get it done meme manual

You will want to read that section of this manual and run the Not having the Prerequisite software installed.

TROUBLESHOOTING: If you get errors during this install it is probably due to your computer.

You can omit these flagsĪnd use the system installed copies but ensure that they are compatible as The -enable-build-libxml2 -enable-build-libxslt flags use theīundled versions of libxml2, libxslt and libexslt. The HTML output of programs will contain buttons that send yourĬlicked. You can set the directory to something different in This will overwrite any previously existing If you wish to install your own MEME Suite Web Application as well. This installs only the command-line versions of programs. Quick Install (for Linux, OS X and Cygwin systems)Įxport PATH=$HOME/meme/bin:$HOME/meme/libexec/meme-:$PATH In addition, the web server requires that a batch scheduler be installed, The MEME Suite web server is implemented using static HTML pages,Ĭonsult the Tomcat and Opal documentation if you wish to install a MEME Suite webserver. Installing the web server requires more detailed configuration information. See the 'Quick Install' link below to get started. Building and installing the command line programs is very straight-forward. The MEME Suite consists of several command line programs and an optional The MEME Suite Motif-based sequence analysis tools Installation of the MEME Suite